Import os import sys import cv2 import matplotlib.pyplot as plt import numpy as np from glob import glob from skimage.io import ImageCollection, imsave from lor import rgb2hsv, rgb2gray, gray2rgb from ansform import resize, warp, SimilarityTransform, AffineTransform, ProjectiveTransform from skimage.feature import ( ORB, match_descriptors, corner_harris, corner_peaks, BRIEF ,) from asure import ransac from skimage.util import img_as_float from numpy.random import randint from skimage.data import imread from asure import label from aph import route_through_array from sklearn.feature_extraction import image from subprocess import Popen, PIPE from multiprocessing import Pool, freeze_support, cpu_count import itertools from scipy.ndimage import rotate import math % matplotlib inline path_to_enblend = '/Users/jhansen/Applications/enblend-enfuse-4.0-mac/enblend' tmp_out = '/tmp/out.png' tmp_base = '/tmp/base.png' tmp_img = '/tmp/img.png' data_dir = './data/jpg/' import peakutils import detect_peaks from shutil import copyfile import subprocess from subprocess import Popen, PIPE from multiprocessing import Pool, freeze_support, cpu_count import matplotlib.pyplot as plt import itertools import os from glob import glob import numpy as np import argparse import sys from mahotas.zernike import zernike_moments from itertools import islice import cv2 from copy import copy, deepcopy from scipy.ndimage import rotate import logging logger = logging.
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